| Commit message (Collapse) | Author | Age | Files | Lines |
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Add dot_config/tuicr/config.toml with theme = "gruvbox-dark".
Symlinked from nix/vm.nix per the symlink invariant so the same
config applies on both host (via chezmoi) and VM (via home-manager).
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Previously every new login retargeted ~/.ssh/agent.sock to its own
per-connection forwarded socket. That broke a multi-connection setup
when the most-recent connection (which 'won' the symlink) dropped:
all surviving connections' panes would point at a dead socket until a
fresh login from a surviving connection re-ran zprofile.
zprofile: only retarget when the existing symlink target is dead
(sshd unlinks the per-connection socket on disconnect, so [[ -S ]] on
the resolved path is a reliable liveness probe). First connection
seeds the symlink, subsequent logins keep using it.
ssh-agent-refresh: scan /tmp/ssh-*/agent.* for any live forwarded
socket and retarget to the first that responds to ssh-add. Lets the
surviving connection recover without waiting for a new login shell.
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Switching to nix's zsh on the Arch host left two functional gaps the
Arch zsh package used to fill:
1. /usr/share/zsh/site-functions in fpath: pacman, paru, systemctl,
journalctl, flatpak, docker, kubectl, makepkg etc. drop their
completions there. nix zsh's compiled-in fpath doesn't include
/usr/share so we lose all of them silently. Added that path (and
vendor-completions for the VM's apt-installed completions) to the
existing fpath loop, guarded by [[ -d ]].
2. HELPDIR for the run-help / help-alias machinery: needed so 'help cd'
etc. find the per-builtin help docs. Pick the first existing version
dir, preferring nix-profile so it matches the running zsh version.
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tuicr's upstream flake uses the legacy 'defaultPackage.<system>' output
schema, not 'packages.<system>.default' — fixes the home-manager switch
error 'attribute packages missing' at nix/flake.nix:28.
zsh: removing the system zsh package took /etc/zsh/zprofile with it,
which used to 'source /etc/profile' and pull in /etc/profile.d/*.sh
(flatpak.sh, nix.sh, etc.). Reconstruct XDG_DATA_DIRS in dot_zprofile
defensively, including per-user + system flatpak exports + nix-profile
share, so 'flatpak update' stops warning and desktop entries from
flatpak/nix-installed apps work in launchers (fuzzel).
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Waybar (and other user services) was inheriting the bare pre-login
PATH from systemd --user, missing ~/.nix-profile/bin and ~/.local/bin.
Modules that call nix-provisioned binaries (pass, python3, ncat from
common.nix) silently picked up system copies instead — symptom was
waybar showing different output from the same script when invoked
manually (thunderbird tb-unread.sh, wifi-status.sh).
Also propagate GNUPGHOME and GPG_TTY so pinentry / pass-otp inside
user services behave the same as in the interactive shell.
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Forwarded SSH_AUTH_SOCK lives at /tmp/ssh-XXX/agent.NNN — a
per-connection path that disappears on disconnect, leaving every
long-running zellij pane (and its children: claude-code, nvim, …)
pointing at a dead socket. Reattaching after reconnect doesn't help:
the env was captured when zellij first started.
Fix: maintain ~/.ssh/agent.sock as a symlink, re-aimed at the live
forwarded socket on every login (zprofile). Export the stable path so
processes inherit a value that survives reconnects — git fetch /
commit signing keep working in re-attached zellij panes with zero
per-pane re-export.
Adds 'ssh-agent-refresh' helper for transitional panes still holding
the dead per-connection path: re-exports SSH_AUTH_SOCK to the stable
symlink and validates with ssh-add -l. Already-running children
(claude-code) must still be restarted since env is inherited, not
observed.
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Make it explicit that adding, removing, or renaming any chezmoi-deployed
config requires a matching update to nix/vm.nix's xdg.configFile /
home.file blocks when the corresponding binary is in common.nix.
Drives the audit performed in the previous commit.
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The VM doesn't run chezmoi, so every config the host gets via chezmoi
must reach the VM via a nix symlink. Audit found gaps for tools whose
binary IS in common.nix but whose dot_config tree was unlinked:
bat, lsd, yazi, ripgrep, fd, wget, npm, ipython,
gdb, clangd, ccache
Plus the new tuicr claude-code skill (under ~/.claude/skills/tuicr/,
NOT ~/.config — uses home.file instead of xdg.configFile).
Reorganises the block by category and adds an INVARIANT comment
pointing at the rule in .github/copilot-instructions.md.
GUI/wayland-only tools (sway/mako/waybar/fuzzel/mpv/zathura/etc) stay
unlinked: the VM is headless.
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Adapts upstream agavra/tuicr's tmux-based wrapper to zellij:
- Detects $ZELLIJ instead of $TMUX
- Spawns child via 'zellij action new-pane --floating' (or --direction
with TUICR_PANE_MODE=split / TUICR_SPLIT_DIR=down)
- Replaces tmux 'wait-for' with a mkfifo / printf done sentinel
- Uses 'pgrep -x tuicr' for the cross-pane already-running probe
(zellij has no list-panes equivalent)
SKILL.md updated for zellij keybinds and a nix install path note.
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tuicr (TUI git-change reviewer) isn't packaged in nixpkgs, so pull it
as a flake input with an overlay exposing pkgs.tuicr. The companion
claude-code skill lives in dot_claude/skills/tuicr/ (separate commit).
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zsh now lives in nix/common.nix instead of meta/base.txt. Removing the
pacman zsh package leaves /etc/passwd dangling at /usr/bin/zsh, so new
login terminals die with 'shell not found'.
Mirror the chsh logic from nix/bootstrap.sh (which only runs on the VM
during first-time provisioning) into the nix-switch recipe so every
`just sync` / `just init` re-asserts the login shell — and the
host gets the same treatment as the VM.
Idempotent: skips when the shell already matches, skips when
~/.nix-profile/bin/zsh is missing (pre-bootstrap state).
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Now that meta/*.txt is conventionally required to list installed
package names (not virtual providers — see preceding commit dropping
ttf-font-awesome in favour of the already-declared otf-font-awesome),
the intersection with pacman -Qq is unnecessary. Failing loudly on a
virtual-provider entry is actually useful: it surfaces a data-entry
mistake instead of silently masking it.
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ttf-font-awesome is a virtual provided by otf-font-awesome (already
declared on the line above) — paru resolves the former to the latter,
so listing both adds nothing and confuses the mark-explicit step in
pkg-apply.
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paru may resolve a declared name to a provider with a different package
name (e.g. ttf-font-awesome -> otf-font-awesome). Calling
`pacman -D --asexplicit` on the declared name then fails with
'could not find or read package' and aborts the recipe.
Intersect the declared list with `pacman -Qq` before bumping reasons;
names not present in the local DB are silently skipped.
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`paru -S --needed` skips packages already on disk, so anything pulled
in transitively first and *later* added to meta/*.txt stays marked as
'installed as a dependency' in the local pacman DB — and keeps showing
up under `pacopt`.
After each install pass, force the declared set to 'explicitly
installed' via `pacman -D --asexplicit`. This treats meta/*.txt as
the source of truth for install reason: anything listed there is
explicit, anything else is a transitive dep.
Idempotent on already-explicit packages (pacman just prints 'install
reason is already explicit', which we discard).
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Root filesystem is btrfs; the userspace tools are needed for routine
maintenance (scrub, balance, subvolume management) and inspection
(`btrfs filesystem usage` — the only honest reporter on btrfs since
plain `df` doesn't account for metadata/profiles/unallocated). Also
used by the mkinitcpio btrfs hook at boot.
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Interactive python REPL. Uses python3Packages.ipython so only the
`ipython` binary lands on PATH — no stray system `python`/`python3`,
preserving the 'tools managed by uv per-project' policy in common.nix.
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linux: previously installed only as an Optional Dep of base. Promote to
an explicit declaration so it stops showing up under pacopt.
dosfstools: required by udisks2 (and libblockdev-fs) for mounting FAT
volumes — USB sticks, the EFI system partition, etc. Universally useful
on any desktop install.
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Promote pacopt from a plain alias to a function. In addition to listing
packages that remain installed solely as someone's optional dependency,
each package is now annotated with its parent(s) and the upstream
reason text from the parent's Optional Deps field.
Implementation is pacman-only (no expac): one awk pass over 'pacman -Qi'
builds a reverse index of every (parent, optdep, reason) edge in the
local DB, then per leaf package the index is filtered for matching deps.
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Stops the 'X news items unread' banner on every home-manager switch.
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Delta's hyperlink resolution shells out to git rev-parse for every
blob to build clickable file links, which is fine on bare metal but
death-by-fork on a slow VM — 'git diff' could take many seconds
while 'git diff | cat' returns instantly. Turn hyperlinks off; we
get clickable nothing but visible-everything-fast diffs.
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Mirror the drop-in already in place for protonmail-bridge. The
default ~/.password-store doesn't exist on this system (store lives
under $XDG_DATA_HOME); without this, pass-secret-service throws
PassNotInitialized when the service is started outside a context
that already exported PASSWORD_STORE_DIR (e.g. D-Bus activation
before sway has imported env). That cascades into protonmail-bridge
failing to persist its IMAP creds and Thunderbird seeing ephemeral
passwords with 'no such user' errors.
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Unused; the pass entry doesn't exist on most machines, so login emitted
'Error: copilot/firecrawl-api-key is not in the password store' on every
shell start. Easier to drop than to gate.
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Just's formatter inserts a blank line so only the immediately-adjacent
comment serves as the recipe's doc string. Pre-existing drift, surfaced
when CI added 'just check-fmt' to the pipeline.
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Older shellcheck (Ubuntu's in CI) flags '[ test ] && cmd || true'
as SC2015 because, despite the intent, A && B || C is not
equivalent to if-then-else (C runs when A is true but B fails).
Replace with explicit 'if … fi' or split into two 'A || continue'
guards. Functionally identical, lint-clean across versions.
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The doctor recipe checks for basedpyright (used by 'just lint' for
Python type-checking), but the CI workflow wasn't installing it,
causing every run since the recipe was added to fail at the doctor
step. Install it via pipx like ruff.
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host.nix reads HOME/USER via builtins.getEnv, which returns "" under
pure-eval (nix run's default). just-nix-switch already passes --impure;
match it here.
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The standalone 'home-manager' command defaults to the legacy
~/.config/home-manager/home.nix and errors out for flake users. The
wrapper auto-selects the host/vm profile by /etc/os-release ID and
points at whichever dotfiles checkout exists on the machine.
Usage:
hm news
hm switch
hm generations
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Refreshes flake.lock (nixpkgs + home-manager) and re-activates the
profile. Plugged into the existing 'just update' aggregate so a weekly
'just update' bumps pacman/AUR + flatpak + nix in one go.
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Upstream rewrote the derivation in 1.0.43+ to fetch a prebuilt binary
from the copilot-cli releases (autoPatchelf + makeBinaryWrapper) instead
of buildNpmPackage, sidestepping the /var/empty/.cache EACCES that
blocked 1.0.40.
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- zsh: remove ~/.local/share/nvim/mason/bin from PATH
- justfile: update comments to reflect Mason removal
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Per user decision: on the Arch host, chezmoi remains the single deployer
of $HOME dotfiles. nix/common.nix's xdg.configFile + sshConfig
activation + .zshenv home.file block was causing home-manager to fight
chezmoi on every nix-switch, materializing .backup files for nvim,
zellij, zsh, git, ghostty, direnv.
Resolution:
- nix/common.nix: drop the entire deployment block, drop the
my.dotfilesPath option, drop the let..in dotfiles/link helpers.
Module is now deployment-agnostic: only installs packages.
- nix/host.nix: drop my.dotfilesPath; explicit comment that chezmoi
owns dotfile deployment on the host.
- nix/vm.nix: gains everything previously in common.nix's deployment
block — xdg.configFile (nvim/zellij/zsh/git/ghostty/direnv),
home.activation.sshConfig, home.file.".zshenv". The 'dotfiles'
let-binding (= $HOME/.local/share/dotfiles) and 'link' helper move
here too, since they're vm-only now.
Host runbook unchanged (`just sync`); first run after pulling will
just be a no-op nix-switch instead of a backup-file storm.
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- common.nix hardcoded the runtime dotfiles checkout to
~/.local/share/dotfiles, which is correct for the remote-dev VM but
not the Arch host (where the canonical clone lives at ~/dotfiles).
ssh activation was failing with 'cannot stat
/home/sommerfeld/.local/share/dotfiles/private_dot_ssh/config' on
every host nix-switch.
Promote the path to a typed option (config.my.dotfilesPath) and set
it from each profile:
nix/host.nix -> $HOME/dotfiles
nix/vm.nix -> $HOME/.local/share/dotfiles
common.nix now wraps its config in 'config = { ... }' so the
options can sit alongside.
- dockerfile-language-server-nodejs was renamed in nixpkgs to
dockerfile-language-server; pick up the new name to silence the
evaluation warning (the rename will eventually become a hard error).
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github-copilot-cli (broken)
nodePackages was removed wholesale from nixpkgs; everything that lived
under it must be referenced via its top-level name or dropped.
- prettier: moved nodePackages.prettier -> prettier (top-level alias).
- jsonlint: not available at top level. Dropped from nix/common.nix
AND from the nvim-lint and conform-nvim configs in
dot_config/nvim/lua/plugins/lsp.lua. jsonls already provides
schema-aware diagnostics; jq still handles formatting. The
jsonlint redundancy is acceptable to lose.
- github-copilot-cli (1.0.40 in nixpkgs): buildNpmPackage derivation
doesn't redirect HOME during npm postinstall, so it fails with
EACCES on /var/empty/.cache on Determinate nix. Removed; install
manually from https://github.com/github/copilot-cli into
/usr/local/bin/ as before (current host already has it there).
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in nix-switch
- gh-actions-language-server is an npm package (lttb/gh-actions-language-server)
not packaged in nixpkgs. Removed from nix/common.nix and from the
vim.lsp.enable list in dot_config/nvim/lua/plugins/lsp.lua. Restore
later via a per-project flake.nix if working on a workflows-heavy repo.
- just runs recipes with a sanitized env where $USER may be unset;
home-manager's activation script dereferences it unconditionally
and fails with 'USER: unbound variable'. Export USER (and HOME for
symmetry) at the top of the nix-switch recipe.
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Migrated to Home-Manager (nix/common.nix):
cmake, ninja, ccache, sccache (build orchestrators — they only
delegate to whatever compiler is on PATH, don't ship one
themselves, so no ABI shadowing risk)
valgrind (instruments at syscall/library boundary; works fine with
pacman-built target binaries)
doxygen (source-only documentation tool; was accidentally dropped
in the previous sweep — restored here)
Dropped entirely (per-project flake.nix + direnv .envrc instead):
clang, lld, mold, rustup, npm
Rationale: these are language/toolchain-specific compilers and
linkers; when a project needs them, the project's own flake provides
the version it wants, pinned in flake.lock. base-devel still ships
gcc/ld/as/make for general-purpose system builds and one-offs.
npm is also dropped from pacman; nodejs_24 in nix/common.nix already
ships npm for the editor/AI-agent path. Project-side npm comes via
per-project flake when needed.
Updated nix/common.nix policy comment to match: only ban the actual
compilers/linkers (cc/gcc/clang/ld) and forbidden runtimes (cargo,
rustc, go, python3) — build orchestrators and instrumentation tools
are explicitly allowed.
The --- dev --- section in base.txt is now just perf and podman-*
(kernel-coupled / system-runtime-coupled).
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Migrated to Home-Manager (nix/common.nix):
duf, gdu, nmap, procs, yazi, difftastic, direnv (was duplicated),
git-absorb, samply, strace, t-rec, act, pandoc, gdb, lldb
lldb stays nix-only (no longer in base.txt) — per user policy, only
ever used to debug own builds, so glibc/kernel ABI skew vs the
pacman-built system isn't a concern. Same logic could extend to
valgrind, but valgrind has tighter glibc compat needs; perf links
against kernel ABI and must match the running kernel. Both stay
pacman.
uv was already in nix; removed pacman duplicate.
Kept on pacman (cannot migrate without breaking system builds, per
nix/common.nix policy that bans compilers/linkers/build systems on
PATH):
ccache, clang, cmake, lld, mold, ninja, npm, rustup, sccache,
podman-compose, podman-docker (system runtime integration),
perf, valgrind (kernel/glibc-coupled), unzip (transitive via base),
doxygen (huge nixpkgs closure not worth it).
Dropped entirely (unused):
android-tools, go, gpg-tui, luarocks (was for Mason-managed nvim
plugin deps; Mason is gone), bash-completion (zsh-only setup),
pandoc-bin (replaced by nix pandoc).
jdk21-openjdk kept — still needed for the groovy/jenkins toolchain
paths in nvim.
Rewrote the --- dev --- section comment to explain the policy.
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Pacman's 'nix' package is already in meta/base.txt and provides the
same multi-user daemon setup (nix-daemon.socket already enabled via
systemd-units/system.txt; flakes already enabled via /etc/nix/nix.conf
from etc/). The curl-piped Determinate installer was adding nothing
on top — and on a host where pacman already installed nix, it would
create two competing nix binaries.
Changes:
- Add 'nix' to PREREQS so pacman installs it alongside the other
prerequisites, before 'just init' runs.
- Drop the curl install block.
- Source /etc/profile.d/nix.sh (or nix-daemon.sh) before 'just init'
so the nix-switch step inside 'just init' finds the binary in PATH.
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Cleanup pass following p7 review:
- pass-otp: wired via pass.withExtensions in nix/common.nix
(`pass otp ...` works against the same store).
- zsh-completions: added as a separate package next to zsh + plugins
(fpath picks it up via HM's nix-profile share/).
- wget: already in nix/common.nix; removed pacman duplicate.
- gnupg: already in nix/common.nix; removed pacman entry.
pcscd still comes from pacman pcsclite (system
service needs root + hardware access), nix gnupg's
scdaemon dials it via /run/pcscd/pcscd.comm.
- curl: removed; pulled transitively by base, base-devel,
paru and many others.
Kept on pacman:
- pcsclite, ccid : pcscd is a system daemon; libs needed by HM scdaemon
- man-db, man-pages : distro-specific
- base, base-devel : meta-packages
- pass-secret-service-bin : AUR-only
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Append two steps to the root bootstrap.sh:
5a. install nix via the Determinate Systems multi-user installer
(same as remote-dev/nix; gives us a proper nix-daemon.service).
5b. chsh to ~/.nix-profile/bin/zsh after appending to /etc/shells.
Add a 'just nix-switch' recipe that auto-picks the host vs vm profile
based on /etc/os-release ID, and wire it into 'just init' and
'just sync' so day-to-day reconciliation also re-applies Home-Manager.
The recipe is a no-op when nix isn't installed, so it stays safe for
pre-bootstrap states and for hosts where the user opts out.
Phase 8 of the nix-on-host migration plan.
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The following are now provisioned by Home-Manager via nix/common.nix
and live under ~/.nix-profile/bin (which is first in PATH per phase
p3):
ripgrep, fd, bat, glow, fzf, lsd, jq, yq (yq-go), zoxide, just, sd,
choose, dog, curlie, hyperfine, htop, fastfetch, tldr, rsync,
mergiraf, git-delta (delta), tree-sitter-cli (tree-sitter), neovim,
zellij, github-cli (gh), pass, openssh, git, zsh,
zsh-syntax-highlighting, zsh-autosuggestions,
zsh-history-substring-search, basedpyright-bin (basedpyright),
rust-analyzer
Kept:
- pass-otp, zsh-completions: no Home-Manager equivalent yet
- pcsclite: still needed by Home-Manager gnupg/scdaemon
(see nix/host.nix scdaemon.conf)
- curl, wget, man-db, man-pages, gnupg: system-fundamental, fine to
keep duplicated. git/openssh/gnupg also come back as transitive
deps of paru/sudo/etc. even if dropped here.
Added hyperfine to nix/common.nix (missed in the p5 batch).
Phase 7 of the nix-on-host migration plan.
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LSPs, formatters, linters, and the lldb-dap debugger now come from
~/.nix-profile/bin (see nix/common.nix). lspconfig keeps the default
configs; we just opt-in via vim.lsp.enable() with an explicit list.
Changes:
- dot_config/nvim/lua/plugins/lsp.lua: drop mason*, replace
mason-lspconfig handler with explicit vim.lsp.enable({...}); drop
groovy/jenkins formatters and lint entries; drop systemd lint
(nginx + groovy + systemdlint tools dropped per plan).
- dot_config/nvim/lua/plugins/debug.lua: drop mason-nvim-dap; drop
codelldb adapter; switch dap.configurations.cpp to type='lldb'
(lldb-dap is the upstream successor, ships with pkgs.lldb).
- dot_config/nvim/init.lua: remove mason.nvim, mason-lspconfig.nvim,
mason-tool-installer.nvim, mason-nvim-dap.nvim from vim.pack.add.
- dot_config/nvim/lua/config/update.lua: remove MasonToolsUpdateSync.
- dot_config/zsh/dot_zshrc: flip plugin source order — prefer
~/.nix-profile/share, fall back to /usr/share/zsh (was the other
way around).
- nix/bootstrap.sh: drop the uv-python3.11 step (no longer needed
once Mason no longer source-builds Python LSPs on Ubuntu 20.04).
Phase 6 of the nix-on-host migration plan.
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Replaces Mason entirely (phase p6 of the nix migration will rip out
mason-tool-installer and friends). The set tracks the previous
ensure_installed list in nvim's lsp.lua, with five niche tools dropped
per the migration plan:
- groovy-language-server, npm-groovy-lint
- nginx-language-server, nginx-config-formatter
- systemdlint
systemd-lsp is renamed to systemd-language-server (the nixpkgs attr
name). codelldb is replaced by lldb-dap (upstream successor, ships with
pkgs.lldb); dap configs switch in phase p6.
Drops jre, basedpyright, cargo, rustc from vm.nix — they only existed
to work around Mason quirks on Ubuntu 20.04 (uv-python wheel
incompatibility, source-build needs). With Mason gone, basedpyright
comes from nixpkgs cleanly on both profiles.
Phase 5 of the nix-on-host migration plan.
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So Home-Manager-provisioned tools shadow pacman/apt across host and VM,
delivering identical tool versions from the same flake.lock. Mason bin
stays for now; phase p6 of the nix migration removes it together with
the Mason plugins.
Phase 3 of the nix-on-host migration plan.
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Restructures the Home-Manager profile to support both the Arch host and
the Ubuntu remote-dev VM from the same flake.
- remote-dev/ → nix/ (hard rename; .chezmoiignore updated)
- home.nix split into common.nix (shared), vm.nix (Mason runtime
carve-outs + podman stack), host.nix (gpg scdaemon delegation to
system pcscd)
- flake.nix exposes homeConfigurations.{vm,host} via a mkProfile
helper
- rj alias in dot_zshrc updated to ~/.local/share/dotfiles/nix
- bootstrap.sh / justfile updated to use #vm against the new path
The split is behaviour-preserving for the VM: vm.nix + common.nix
together carry the same package set as the previous home.nix.
host.nix is provisioned but not yet wired into bootstrap (phase p8).
Phase 1 of the nix-on-host migration plan.
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No longer needed.
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Gradle 9.1 (and thus Mason's groovy-language-server build) doesn't
support Java 26 bytecode yet — builds fail with 'Unsupported class
file major version 70'. Nothing in the dotfiles uses a feature
beyond JDK 21, and both packages provide the same java-runtime
virtual, so dependents are unaffected.
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sommerfeld